Index

A

annotate_from_gff() (in module crispio.annotate)

as_dict() (crispio.map.GuideMatch method) as_gff() (crispio.map.GuideLibrary method)

C

crispio module crispio.annotate module crispio.cli module crispio.crosstalk module

crispio.features module crispio.map module crispio.utils module

F

featurize() (in module crispio.features) from_generating() (crispio.map.GuideLibrary class method)

from_mapping() (crispio.map.GuideLibrary class method) from_search() (crispio.map.GuideMatchCollection class method)

G

genome (crispio.map.GuideLibrary attribute), [1] get_context() (in module crispio.features) get_features() (in module crispio.features) guide_context_down (crispio.map.GuideMatch attribute) guide_context_up (crispio.map.GuideMatch attribute) guide_end (crispio.map.GuideMatch attribute) guide_matches (crispio.map.GuideLibrary attribute), [1]

guide_name (crispio.map.GuideMatchCollection attribute), [1] guide_seq (crispio.map.GuideMatch attribute), [1] (crispio.map.GuideMatchCollection attribute), [1] guide_start (crispio.map.GuideMatch attribute) GuideLibrary (class in crispio.map) GuideMatch (class in crispio.map) GuideMatchCollection (class in crispio.map)

L

length (crispio.map.GuideMatch attribute), [1]

M

main() (in module crispio.cli) matches (crispio.map.GuideMatchCollection attribute), [1] module crispio crispio.annotate crispio.cli crispio.crosstalk crispio.features crispio.map crispio.utils

P

pam_end (crispio.map.GuideMatch attribute), [1] pam_search (crispio.map.GuideMatch attribute), [1] (crispio.map.GuideMatchCollection attribute), [1]

pam_seq (crispio.map.GuideMatch attribute), [1] pam_start (crispio.map.GuideMatch attribute), [1] pams (crispio.utils.SequenceCollection attribute)

R

reverse (crispio.map.GuideMatch attribute)

S

scaffolds (crispio.utils.SequenceCollection attribute)

SequenceCollection (class in crispio.utils)